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59. Kitakura, S., Fujita,
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58. Tanaka, H., Onouchi,
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formation in Arabidopsis embryos and juvenile plants. Development
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27. Yoshioka, Y., Kurei,
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kinase gene of Arabidopsis thaliana with spatially and temporally regulated
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56. Ito, M., Araki, S.,
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cell cycle is mediated by c-Myb-like transcription factors. The Plant
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55. Semiarti, E., Onouchi,
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54. Semiarti, E., Ueno,
Y., Tsukaya, H., Iwakawa, H., Machida, C. and Machida, Y. (2001). The ASYMMETRIC
LEAVES2 gene of Arabidopsis thaliana regulates formation of a symmetric
lamina, establishment of venation and repression of meristem-related homeobox
genes in leaves. Development 128, 1771-1783.
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53. Nishihama, R., Ishikawa,
M., Araki, S., Soyano, T., Asada, T. and Machida, Y. (2001). The NPK1 mitogen-activated
kinase kinase kinase is a regulator of cell-plate formation in plant cytokinesis.
Genes & Development 15, 352-363.
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52. Nakagawa, Y., Machida,
C., Machida, Y. and Toriyama, K. (2001). A system to induce deletion of
genomic sequences using R/RS site-specific recombination and the Ac transposon
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51. Hamada, S., Onouchi,
H., Tanaka, H., Kudo, M., Liu, Y.-G., Shibata, D., Machida, C. and Machida,
Y. (2000). Mutations in the WUSCHEL gene of Arabidopsis thaliana result
in the development of shoot without juvenile leaves. Plant J.
24, 91-101.
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50. Toyoda-Yamamoto, A.,
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49. Nakagawa, Y., Machida,
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of the maize transposable element Ds in transgenic plants. Plant &
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48. Kojima, S., Banno,
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47. Bhalerao, R.-P., Salchert,
K., Bako, L., Ökresz, L., Szabados, L., Muranaka, T., Machida, Y., Schell,
J. and Koncz, C. (1999). Regulatory interaction of PRL1 WD protein with
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45. Nakashima, M., Hirano,
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expression pattern of the gene for NPK1 protein kinase related to mitogen-activated
protein kinase kinase kinase (MAPKKK) in a tobacco plant: Correlation with
cell proliferation. Plant and Cell Physiology, Volume 39, Issue
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44. Ito M., Iwase M.,
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A. (1998). A Novel cis-Acting Element in Promoters of Plant B-Type Cyclin
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43. Machida, C., Onouchi,
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42. Nishihama, R. Banno,
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of differential splicing in the regulation of the activity of Arabidopsis
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41. Yoshioka, Y., Takahashi,
Y., Matsuoka, K., Nakamura, K., Koizumi, J., Kojima, M. and Machida, Y.
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40. Usami, S., Banno,
H., Ito, Y., Nishihama, R. and Machida, Y. (1995). Cutting activates a 46-kilodalton
protein kinase in plants. Proc. Natl. Acad. Sci. USA 92, 8660-8664.
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39. Onouchi, H., Nishihama,
R., Kudo, M., Machida, Y. and Machida, C. (1995). Visualization of site-specific
recombination catalized by a recombinase from Zygosaccharomyces rouxii in
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38. Shibata, W., Banno,
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37. Ohba, T., Yoshioka,
Y., Machida, C. and Machida, Y. (1995). DNA rearrangement associated with
the integration of T-DNA in tobacco: an example for multiple duplications
of DNA around the integration target. Plant J. 7, 157-164.
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36. Niwa, Y., Muranaka,
T., Baba, A. and Machida, Y. (1994). Organ-specific and auxin-inducible
expression of two tobacco par-related genes in transgenic plants. DNA
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35. Ito, Y., Bannno, H.,
Moribe, T., Hinata, K. and Machida, Y. (1994). NPK15, a tobacco protien-serine/threonine
kinase with a single hydrophobic region near the amino terminus. Mol.
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34. Muranaka, T., Bannno,
H. and Machida, Y. (1994). Characterization of Tobacco Protein Kinase NPK5,
a Homolog of Saccharomyces cerevisiae SNF1 That Constitutively Activates
Expression of the Glucose-Repressible SUC2 Gene for a Secreted Invertase
of S. cerevisiae. Mol. Cell Biol. 14, 2958-2965.
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33. Muranaka, T., Niwa,
Y. and Machida, Y. (1994). A model for a bioconversion system with the promoter
of the parAt gene, which confers a high level of expression of a transgene
in hairy roots. Appl. Microbiol. Biotechnol. 40, 841-845.
https://doi.org/10.1007/s002530050077
32. Shimoda, N., Toyoda-Yamamoto,
A., Aoki, S. and Machida, Y. (1993). Genetic Evidence for an Interaction
between the VirA Sensor Protein and the ChvE Sugar-binding protein of Agrobacterium.
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31. Bannno, H., Hirano,
K., Nakamura, T., Irie, K., Nomoto, S., Matsumoto, K. and Machida, Y. (1993).
NPK1, a tobacco gene that encodes a protein with a domain homologous to
yeast BCK1, STE11 and Byr2 protein kinases. Mol. Cell Biol. 13,
4745-4752.
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30. Yoshioka, Y., Matsumoto,
S., Kojima, S., Ohshima, K., Okada, N. and Machida, Y. (1993). Molecular
characterization of a short interspersed repetitive element (SINE) from tobacco
that exhibits sequence homology to specific tRNAs. Proc. Natl. Acad.
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29. Onouchi, H., Yokoi,
K., Machida, C., Matsuzaki, H., Ohshima, Y., Matsuoka, K., Nakamura, K.
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system of Zygosaccharomyces rouxii in tobacco cells. Nucleic Acids
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28. Okamoto, S., Toyoda-Yamamoto,
A., Ito, K., Takebe, I. and Machida, Y. (1991). Localization and orientation
of the VirD4 protein of Agrobacterium tumefaciens in the cell membrane.
Mol. Gen. Genet. 228, 24-32.
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27. Matsumoto, S., Ito,
Y., Hosoi, T., Takahashi, Y. and Machida, Y. (1990). Integration of Agrobacterium
T-DNA into a tobacco chromosome: possible involvement of DNA homology between
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26. Matsuoka, K., Matsumoto,
S., Hattori, S., Machida, Y. and Nakamura, K. (1990). Vacuolar targeting
and posttraslational processing of the precursor to the sweet potato tuberous
root storage protein in heterologous plant cells. J. Biol. Chem. 265,
19750-19757.
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25. Shimoda, N., Toyoda-Yamamoto
A., Nagamine, J., Usami, S., Katayama, M., Sakagami, Y. and Machida, Y.
(1990). Control of expression of Agrobacterium vir genes by synergistic
actions of phenolic signal molecules and monosaccharides. Proc. Natl.
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24. Takahashi, Y., Kuroda, H., Tanaka, T., Machida, Y., Takebe, I. and
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the transition from G0 to S phase in tobacco mesophyll protoplasts. Proc.
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22. Niwa, Y., Yamamoto, A., Machida, C, Takebe, I. and Machida Y. (1988).
Right-hand border regions of octopine T-DNA are recognized by RNA polymerase
of Agrobacterium as well as by VirD1 and virD2 proteins. Nucleic Acids
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21. Okamoto, S., Machida, Y. and Takebe, I. (1988). Subcellular localization
of tobacco mosaic virus minus strand RNA in infected protoplast. Virology
167, 194-200.
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20. Usami, S., Okamoto, S., Takebe, I. and Machida, Y. (1988). Novel factor
inducing Agrobacteriumtumefaciens vir gene expression is present in monocotyledonous
plants. Proc Natl Acad Sci USA. 1988 Jun; 85(11): 3748–3752.
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19. Matsumoto, S.,Takebe I. and Machida, Y. (1988). Escherichia coli lacZ
gene as a biochemical and histochemical marker in plant cells. Gene
66, 19-29.
https://doi.org/10.1016/0378-1119(88)90221-1
18. Machida, C. and Machida, Y. (1987). Base substitutions in transposable
element IS1 cause DNA duplication of variable length at the target site
for plasmid cointegration. EMBO J. 6, 1799-1803.
https://www.ncbi.nlm.nih.gov/pubmed/3038535
17. Usami, S., Morikawa, S., Takebe, I. and Machida, Y. (1987). Absence
in monocotyledonous plants of the plant factors inducing T-DNA circularization
and vir gene expression in Agrobacterium. Mol. Gen. Genet. 209,
221-226.
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16. Yamamoto, A., Iwahashi, M., Yanofsky, M.- F., Nester, E.- W., Takebe,
I. and Machida, Y. (1987). The promoter proximal region in the virD locus
of Agrobacterium tumefaciens is necessary for the plant-inducible circularization
of T-DNA. Mol. Gen. Genet. 206, 174-177.
https://doi.org/10.1007/BF00326554
15. Machida, Y., Usami, S., Yamamoto, A. and Takebe, I. (1986). Plant-inducible
recombination between the 25-base-pair border sequences of T-DNA in Agrobacterium
tumefaciens. Mol. Gen. Genet. 204, 374-382.
https://doi.org/10.1007/BF00331013
14. Matsumoto, S., Machida, Y. and Takebe, I. (1986). A rapid method for
assaying tumorigenicity of Agrobacterium tumefaciens. Plant Modecular
Biology Reporter 4, 42-47.
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13. Hashimoto, J. and Machida, Y. (1985). The sequence in potato spindle
tuber viroid required for infection of its cDNA: a putative rocessing site
in viroid replication J. Gen. Appl. Microbiol. 31, 551-561.
https://doi.org/10.2323/jgam.31.551
12. Machida, Y., Sakurai, M., Kiyokawa, S., Ubasawa, A., Suzuki, Y. and
Ikeda, J.-E (1984). Nucleotide sequence of the IS element found in the T-DNA
region of mutant Ti plasmid pTiA66 and distribution of its homologues in octopine
Ti plasmid. Proc. Natl. Acad. Sci. USA 81, 7495-7499.
https://doi.org/10.1073/pnas.81.23.7495
11. Machida, C., Machida, Y. and Ohtsubo, E. (1984). Both inverted repeat
sequences of the insertion element IS1 provide promorter function for RNA
polymerase. J. Mol. Biol. 177, 247-265.
https://doi.org/10.1016/0022-2836(84)90455-8
10. Machida, Y., Machida, C. and Ohtsubo, E. (1984). Insertion element
IS1 encodes two structural genes responsible for its transposition.
J. Mol. Biol. 177, 229-245.
https://doi.org/10.1016/0022-2836(84)90454-6
9. Armstrong, K.-A., Acosta, R., Lender, E., Machida, Y., Pancotto, M.,
McCormick, M., Ohtsubo, H. and Ohtsubo, E. (1984). A 37 × 103 molecular weight
plasmid-encoded protein is required for replication and copy number control
in the plasmid pSC101 and its temperature-sensitive derivative pHS1. J.
Mol. Biol. 175, 331-348.
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8. Machida, Y. and Ikeda, J.-E. (1983). Simple method for detection of
Ti plasmid DNA in Agrobacterium tumefaciens. Plant Molecular Biology
Reporter 1, 39-40.
https://doi.org/10.1007/BF02680261
7. Zenilman, M., Machida, Y., Ohtsubo, H. and Ohtsubo, E. (1983). Inactivation
of the replication genes of a pSC101 derivative by IS1-mediated integration
of the plasmid pSM1. J. Gen. Appl. Microbiol. 29, 223-232.
https://doi.org/10.2323/jgam.29.223
6. Machida, C., Machida, Y., Wang, H.-C. R., Ishizaki, K. and Ohtsubo,
E. (1983). Repression of cointegration ability of insetion element IS1 by
transcriptional readthrough from flanking regions. Cell 34,
135-142.
https://doi.org/10.1016/0092-8674(83)90143-5
5. Machida, Y., Machida, C. and Ohtsubo, E. (1982). A novel type of transposon
generated by insertion element IS102 present in a pSC101 derivative. Cell
30, 29-36.
https://doi.org/10.1016/0092-8674(82)90008-3
4. Machida, Y., Machida, C., Ohtsubo, H. and Ohtsubo, E. (1982). Factors
determining frequency of plasmid cointegration mediated by insertion sequence
IS1. Proc. Natl. Acad. Sci. USA 79, 277-281.
https://www.ncbi.nlm.nih.gov/pubmed/345709
3. Machida, Y., Okazaki, T., Miyake, T., Ohtsuka, E. and Ikehara, M. (1981).
Characterization of Nascent DNA Fragments Produced by Excision of Uracil
Residues in DNA. Nucleic Acids Research 9, 4755-4766.
https://doi.org/10.1093/nar/9.18.4755
2. Wada, A., Tachibana, H., Ueno, S., Hushimi, Y. and Machida, Y. (1977).
Melting Fine Structure of DNA Fragments of Known Sequence from φX174. Nature
269, 352-353.
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1. Machida, Y., Okazaki, T. and Okazaki, R. (1977). Discontinuous Replication
of Replicative Form DNA from Bacteriophage φX174. Proc. Natl. Acad.
Sci. USA. 74, 2776-2779.
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