publications.html

Publication list

A. Original articles

126. Machida, Y., Suzuki, T., Sasabe, M., Iwakawa, H., Kojima, S., and Machida, C. (2022). Arabidopsis ASYMMETRIC LEAVES2 (AS2): roles in plant morphogenesis,cell division, and pathogenesis. Journal of Plant Research 133:3-14
https://doi.org/10.1007/s10265-021-01349-6

125. Maeda, K., Sasabe, M., Hanamata, S., Machida, Y., Hasezawa, S. and Higaki, T. (2020). Actin Filament Disruption Alters Phragmoplast Microtubule Dynamics during the Initial Phase of Plant Cytokinesis. Plant Cell Physiol. 61(3):445-456. Mar 1.
https://doi.org/10.1093/pcp/pcaa003

124. Luo, L., Ando, S., Sakamoto, Y., Suzuki, T., Takahashi, H., Ishibashi, N., Kojima, S., Kurihara, D., Higashiyama, T., Yamamoto, K.-T., Matsunaga, S., Machida, C., Sasabe, M. and Machida, Y. (2020). The formation of perinucleolar bodies is important for normal leaf development and requires the zinc-finger DNA-binding motif in Arabidopsis ASYMMETRIC LEAVES2. Plant J. 101, 1118-1134. Mar [First pub 2019 Oct 22].
https://doi.org/10.1111/tpj.14579 　cover

123. Vial-Pradel, S., Hasegawa, Y., Nakagawa, A., Miyaki, S., Machida, Y., Kojima, S., Machida, C. and Takahashi, H. (2019). SIMON: Simple methods for analyzing DNA methylation by targeted bisulfite next-generation sequencing. Plant Biotechnol (Tokyo). 36(4):213-222. Dec 25.
https://doi.org/10.5511/plantbiotechnology.19.0822a

122. Luong.T-Q., Keta, S., Asai, T., Kojima, S., Nakagawa. A., Micol, J.-L., Xia, S., Machida, Y. and Machida, C. (2018). A genetic link between epigenetic repressor AS1-AS2 and DNA replication factors in establishment of adaxial-abaxial leaf polarity of Arabidopsis. Plant Biotechnology 35, 39–49.
https://doi.org/10.5511/plantbiotechnology.18.0129b

121. Vial-Pradel. S., Keta, S., Nomoto. M., Luo, L., Takahashi, H., Suzuki, M., Yokoyama, Y., Sasabe. M., Kojima. S., Tada. Y.,Machida. Y. and Machida, C. (2018). Arabidopsis zinc-finger-like protein ASYMMETRIC LEAVES2 (AS2) and two nucleolar proteins maintain gene body DNA methylation in the leaf polarity gene ETTIN (ARF3). Plant & Cell Physiology 59 (7), 1385–1397.　
https://doi.org/10.1093/pcp/pcy031

120. Ohbayashi, I., Lin, C.-Y., Shinohara, N., Matsumura, Y., Machida, Y., Horiguchi, G., Tsukaya, H.and Sugiyama, M. (2017). Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis. The Plant Cell Vol. 29: 2644–2660, October 2017
https://doi.org/10.1105/tpc.17.00255

119. Li, H., Sun, B., Sasabe, M., Deng, X.-G., Machida, Y., Lin, H., Lee Y.-R. and Liu, B. (2017). Arabidopsis MAP65-4 Plays A Role in Phragmoplast Microtubule Organization and Marks the Cortical Cell Division Site. New Phytologist 215: 187–201.　
https://doi.org/10.1111/nph.14532

118. Suzuki, T., Matsushima, C., Nishimura, S., Higashiyama, T., Sasabe, M. Machida, Y. (2016). Identification of Phosphoinositide-binding Protein PATELLIN2 as a Substrate of Arabidopsis MPK4 MAP Kinase during Septum Formation in Cytokinesis. Plant Cell Physiol. Aug;57(8):1744-55. Epub 2016 May 19.
https://doi.org/10.1093/pcp/pcw098

117. Matsumura, Y., Ohbayashi, I., Takahash, H., Kojima, S., Ishibashi, N., Keta, S, Nakagawa, A., Hayashi, R., Saéz-Vásquez, J., Echeverria, M., Sugiyama, M., Nakamura,K., Machida, C. and Machida, Y. (2016). A genetic link between epigenetic repressor AS1-AS2 and a putative small subunit processome in leaf polarity establishment of Arabidopsis. Biology Open 5(7): 942-954.
https://doi.org/10.1242/bio.019109

116. Kawamoto, N., Sasabe, M., Endo, M., Machida, Y. and Araki, T. (2015). Calcium-dependent protein kinases responsible for the phosphorylation of a bZIP transcription factor FD crucial for the florigen complex formation. Sci Rep. 2015 Feb 9; 5: 834.
https://doi.org/10.1038/srep08341

115. Saito, T., Fujikawa, H., Haga, N., Suzuki, T., Machida, Y. and Ito, M. (2015). Genetic interaction between G2/M phase-specific transcription factor MYB3R4 and MAPKKK ANP3 for execution of cytokinesis in Arabidopsis thaliana. Plant Signal. Behav. 2015 ; 10(3) : e990817.
https://doi.org/10.4161/15592324.2014.990817

114. Sasabe, M., Ishibashi, N., Haruta, T., Minami, A., Kurihara, D., Higashiyama, T., Nishihama, R., Ito, M. and Machida, Y. (2015). The carboxyl-terminal tail of the stalk of Arabidopsis NACK1/HINKEL kinesin is required for its localization to the cell plate formation site. J. Plant Res. 128:327–336.
https://doi.org/10.1007/s10265-014-0687-2

113. Araki, S., Kato, K., Suzuki, T., Okumura, T., Machida, Y. and Ito, M. (2013). Cosuppression of NtmybA1 and NtmybA2 causes downregulation of G2/M phase-expressed genes and negatively affects both cell division and expansion in tobacco. Plant Signal. Behav. Oct; 8(10)
https://doi.org/10.4161/psb.26780

112. Ishibashi, N., Machida, C. and Machida, Y. (2013). ASYMMETRIC LEAVES2 and FASCIATA2 cooperatively regulate the formation of leaf adaxial-abaxial polarity in Arabidopsis thaliana. Plant Biotechnology 30, 411-415.
https://doi.org/10.5511/plantbiotechnology.13.0513a

111. Murata, T., Sano, T., Sasabe, M., Nonaka, S., Higashiyama, T., Hasezawa, S., Machida, Y. and Hasebe, M. (2013). Mechanism of microtubule array expansion in the cytokinetic phragmoplast. Nat Commun Jun 17; 4:1967.
https://doi.org/10.1038/ncomms2967

110. Iwasaki, M., Takahashi, H., Iwakawa, H., Nakagawa, A., Ishikawa, T., Tanaka, H., Matsumura, Y., Pekker, I., Eshed, Y., Vial-Pradel, S., Ito, T., Watanabe, Y., Ueno, Y., Fukazawa, H., Kojima, S., Machida, Y. and Machida, C. (2013). Dual regulation of ETTIN (ARF3) gene expression by AS1-AS2, which maintains the DNA methylation level, is involved in stabilization of leaf adaxial-abaxial partitioning in Arabidopsis. Development 140,1958-1969.
https://doi.org/10.1242/dev.085365

109. Takahashi, H., Iwakawa, H., Ishibashi, N., Kojima, S., Matsumura, Y., Prananingrum, P., Iwasaki, M., Takahashi, A., Ikezaki, M., Luo, L., Kobayash, T., Machida, Y. and Machida, C. (2013). Meta-analyses of microarrays of Arabidopsis asymmetric leaves1 (as1), as2 and their modifying mutants reveal a critical role of the ETT pathway in stabilization of adaxial-abaxial patterning and cell division during leaf development. Plant Cell Physiol.54 (3), 418-431.
https://doi.org/10.1093/pcp/pct027

108. Araki, S., Machida, Y. and Ito, M. (2012). Virus-induced silencing of NtmybA1 and NtmybA2causes incomplete cytokinesis and reduced shoot elongation in Nicotiana benthamiana. Plant Biotechnology 29, 483-487.
https://doi.org/10.5511/plantbiotechnology.12.1004a

107. Kinoshita, N., Wang, H., Kasahara, H., Liu, J., MacPherson, C., Machida, Y., Kamiya, Y., Hannah, M.-A. and Chua, N.-H. (2012). IAA-Ala Resistant3, an Evolutionarily Conserved Target of miR167, Mediates Arabidopsis Root Architecture Changes during High Osmotic Stress. The Plant Cell, Vol. 24: 3590–3602.
https://doi.org/10.1105/tpc.112.097006

106. Takahashi, H., Nakagawa, A., Kojima, S., Takahashi, A., Cha, B.-Y., Woo, J.-T., Nagai, K., Machida, Y. and Machida, C. (2012). Discovery of novel rules for G-quadruplex-forming sequences in plants by using bioinformatics methods. J. Biosci. Bioeng. 2012 Nov;114(5):570-5.
https://doi.org/10.1016/j.jbiosc.2012.05.017

105. Nakagawa, A., Takahashi, H., Kojima, S., Sato, N., Ohga, K., Cha, B. Y., Woo, J.-T., Nagai, K., Horiguchi, G., Tsukaya, H., Machida, Y. and Machida, C. (2012). Berberine enhances defects in the establishment of leaf polarity in asymmetric leaves1 and asymmetric leaves2 of Arabidopsis thaliana. Plant Mol. Biol. 79(6), 569-581.
https://doi.org/10.1007/s11103-012-9929-7

104. Sugita, C., Kato, Y., Yoshioka, Y., Tsurumi, N., Iida, Y., Machida, Y. and Sugita, M. (2012). CRUMPLED LEAF (CRL) Homologs of Physcomitrella patens are Involved in the Complete Separation of Dividing Plastids. Plant Cell Physiol. 53(6), 1124-1133. Apr 17.
https://doi.org/10.1093/pcp/pcs058

103. Luo, L., Ando, S., Sasabe, M., Machida, C., Kurihara, D., Higashiyama, T. and Machida, Y. (2012). Arabidopsis ASYMMETRIC LEAVES2 protein required for leaf morphogenesis consistently forms speckles during mitosis of tobacco BY-2 cells via signals in its specific sequence. J. Plant Res. 125, 661-668.
https://doi.org/10.1007/s10265-012-0479-5

102. Ishibashi, N., Kanamaru, K., Ueno, Y., Kojima, S., Kobayashi, T., Machida, C. and Machida, Y. (2012). ASYMMETRIC-LEAVES2 and an ortholog of eukaryotic NudC domain proteins repress expression of AUXIN-RESPONSE-FACTOR and class 1 KNOX homeobox genes for development of flat symmetric leaves in Arabidopsis. Biology Open 1(3), 197-207.
https://doi.org/10.1242/bio.2012406

101. Keta, S., Iwakawa, H., Ikezaki, M., Semiarti, E., Kojima, S., Machida, Y. and Machida, C (2012). Roles of the ASYMMETRIC LEAVES2 gene in floral organ development in Arabidopsis thaliana. Plant Biotechnology 29, 1-8.
https://doi.org/10.5511/plantbiotechnology.11.1101a

100. Sasabe, M., Boudolf, V., De Veylder, L., Inzé, D., Genschik, P. and Machida, Y. (2011). Phosphorylation of a mitotic kinesin-like protein and a MAPKKK by cyclin-dependent kinases (CDKs) is involved in the transition to cytokinesis in plants. Proc. Natl. Acad. Sci. USA 108 (43), 17844-17849.
https://doi.org/10.1073/pnas.1110174108

99. Kojima, S., Iwasaki, M., Takahashi, H., Imai, T., Matsumura, Y., Fleury, D., Van Lijsebettens, M., Machida, Y. and Machida, C. (2011). ASYMMETRIC LEAVES2 and histone acetyl transferase complex Elongator are involved in the establishment of polarity in leaves of Arabidopsis thaliana. Plant Cell Physiol. 52, 1259-1273.
https://doi.org/10.1093/pcp/pcr083

98. Sasabe, M., Kosetsu, K., Hidaka, M., Murase, A. and Machida, Y. (2011). Arabidopsis thaliana MAP65-1 and MAP65-2 function redundantly with MAP65-3/PLEIADE in cytokinesis downstream of MPK4. Plant Signaling & Behavior 65, 743-747.
https://doi.org/10.4161/psb.6.5.15146

97. Kosetsu, K., Matsunaga, S., Nakagam, H., Colcombet, J., Sasabe, M., Soyano, T., Takahashi, T., Hirt, H. and Machida, Y. (2010). The MAP kinase MPK4 is required for cytokinesis in Arabidopsis thaliana. The Plant Cell 22, 3778-3790.
https://doi.org/10.1105/tpc.110.077164

96. Takahashi, Y., Soyano, T., Kosetsu, K., Sasabe, M. and Machida, Y. (2010). HINKEL kinesin, ANP MAPKKKs and MKK6/ANQ MAPKK, which phosphorylates and activates MPK4 MAPK, constitute a pathway that is required for cytokinesis in Arabidopsis thaliana. Plant Cell Physiol. 51, 1766-1776. Cover.
https://doi.org/10.1093/pcp/pcq135

95. Semiarti, E., Indrianto, A., Purwantoro, A., Martiwi, I.-N.-A., Feroniasanti, Y.- M.- L., Nadifah, F., Mercuriana, I.- S., Dwiyani, R., Iwakawa, H., Yoshioka, Y., Machida, Y. and Machida, C. (2010). High-frequency genetic transformation of Phalaenopsis amabilis orchid using tomato extract-enriched medium for the pre-culture of protocorms. J. Horticultural Science & Biotechnology 85 (3) 205–210.
https://doi.org/10.1080/14620316.2010.11512655

94. Tabata, R., Ikezaki, M., Fujibe, T., Aida, M., Tian, C.-E., Ueno, Y., Yamamoto, K.-T., Machida, Y., Nakamura, K. and Ishiguro, S. (2010). Arabidopsis AUXIN RESPONSE FACTOR6 and 8 Regulate Jasmonic Acid Biosynthesis and Floral Organ Development via Repression of Class 1 KNOX Genes. Plant Cell Physiol. .51, 164-175.
https://doi.org/10.1093/pcp/pcp176

93. Ikezaki, M., Kojima, M., Sakakibara, H., Kojima, S., Ueno, Y., Machida, C. and Machida, Y. (2009). Genetic networks regulated by ASYMMETRIC LEAVES1 (AS1) and AS2 in leaf development in Arabidopsis: KNOX genes control five morphological events. Plant J. 61(1), 70-82.
https://doi.org/10.1111/j.1365-313X.2009.04033.x

92. Chen, Y., Asano, T., Fujiwara, M.-T., Yoshida, S., Machida, Y. and Yoshioka, Y. (2009). Plant cells without detectable plastids are generated in the crumpled leaf mutant of Arabidopsis thaliana. Plant Cell Physiol. 50, 956-969.
https://doi.org/10.1093/pcp/pcp047

91. Krupnova, T., Sasabe, M., Ghebreghiorghis, L., Gruber, C. W., Hamada, T., Dehmel, V., Strompen, G., Stierhof, Y.-D. Lukowitz, W., Kemmerling, B., Machida, Y., Hashimoto, T., Mayer, U. and Juergens, G. (2009). Microtubule-associated kinase-like protein RUNKEL needed for cell plate expansion in Arabidopsis cytokinesis. Curr. Biol. 19, 518-523.
https://doi.org/10.1016/j.cub.2009.02.021

90. Matsumura, Y., Iwakawa, H., Machida, Y. and Machida, C. (2009). Characterization of genes in the ASYMMETRIC LEAVES2/LATERAL ORGAN BOUNDARIES (AS2/LOB) family in Arabidopsis thaliana and functional and molecular comparisons between AS2 and other family members. Plant J. 58, 525-537.
https://doi.org/10.1111/j.1365-313X.2009.03797.x

89. Fujita, H., Syono, K., Machida, Y. and Kawaguchi, K. (2008). Morphological effects of sinefungin, an inhibitor of S-adenosylmethionine-dependent methyltransferases, on Anabaena sp. PCC 7120. Microbes Environ. 23: 346-349.
https://doi.org/10.1264/jsme2.me08519

88. Soyano, T., Thitamadee, S., Machida, Y. and Chua, N.-H. (2008). DOMAIN genes, ASL19/LBD30 and ASL20/LBD18, control tracheary element differentiation in Arabidopsis. Plant Cell 20, 3359-3373.
https://doi.org/10.1105/tpc.108.061796

87. Takahashi, H., Iwakawa, H., Nakao, S., Ojio, T., Morishita, R., Morikawa, S., Machida, Y., Machida, C. and Kobayashi, T. (2008). Knowledge-based fuzzy adaptive resonance theory and the application to gene expression aanalysis of plants. J. Biosci. Bioeng. 106(6), 587-593.
https://doi.org/10.1263/jbb.106.587

86. Yang, J.-Y., Iwasaki, M., Machida, C., Machida, Y., Zhou, X. and Chua, N.-H. (2008). βC1, the pathogenicity factor of TYLCCNV, interacts with AS1 to alter leaf development and suppress selective jasmonic acid responses. Genes Dev. 22, 2564-2577.
https://doi.org/10.1101/gad.1682208

85. Kitakura, S., Terakura, S., Yoshioka, Y., Machida, C. and Machida, Y. (2008). Interaction between Agrobacterium oncoprotein 6b and a tobacco nucleolar protein that is homologous to TNP1 encoded by an Antirrhinum transposable element. J. Plant Research Jul;121(4):425-33.
https://doi.org/10.1007/s10265-008-0160-1

84. Ishikawa, T., Machida, C., Yoshioka, Y., Ueda, T., Nakano, A. and Machida, Y. (2008). The EMBRYO YELLOW gene, encoding a subunit of the conserved oligomeric Golgi complex, is required for appropriate cell expansion and meristem organization in Arabidopsis thaliana. Genes to Cells 13(6), 521-535.
https://doi.org/10.1111/j.1365-2443.2008.01186.x

83. Terakura, S., Ueno, Y., Tagami, H., Kitakura, S., Machida, C., Wabiko, H., Aiba, H., Otten, L., Tsukagoshi, H., Nakamura, K. and Machida, Y. (2007). An Oncoprotein from the plant pathogen Agrobacterium has histone-chaperone-like activity. Plant Cell 19, 2855-2865.
https://doi.org/10.1105/tpc.106.049551

82. Iwakawa, H., Iwasaki, M., Kojima, S., Ueno, Y., Soma, T., Tanaka, H., Semiarti, E., Machida, Y. and Machida, C. (2007). Expression of the ASYMMETRIC LEAVES2 gene in the adaxial domain of Arabidopsis leaves represses cell proliferation in this domain and is critical for the development of properly expanded leaves. Plant J. 51, 173-184.
https://doi.org/10.1111/j.1365-313X.2007.03132.x

81. Tanaka, H., Watanabe, M., Sasabe, M., Hiroe, T., Tanaka, T., Tsukaya, T., Ikezaki, M., Machida, C. and Machida, Y. (2007). Novel receptor-like kinase ALE2 controls shoot development by specifying epidermis in Arabidopsis. Development 134, 1643-1652.
https://doi.org/10.1242/dev.003533

80. Semiarti, E., Indrianto, A., Purwantoro, A., Isminingsih, S., Suseno, N., Ishikawa, T., Yoshioka, Y., Machida, Y. and Machida, C. (2007). Agrobacterium-mediated transformation of the wild orchid species Phalaenopsis amabilis. Plant Biotech. 24 (3)265-272.
https://doi.org/10.5511/plantbiotechnology.24.265

79. Ueno, Y., Ishikawa, T., Watanabe, K., Terakura, S., Iwakawa, H., Okada, K., Machida, C. and Machida, Y. (2007). Histone deacetylases and ASYMMETRIC LEAVES2 are involved in the establishment of polarity in leaves of Arabidopsis. Plant Cell 19(2), 445-457.
https://doi.org/10.1105/tpc.106.042325

78. Terakura, S., Kitakura, S., Ishikawa, M., Ueno, Y., Fujita, T., Machida, C., Wabiko, H. and Machida, Y. (2006). Oncogene 6b from Agrobacterium tumefaciens induces abaxial cell division at late stages of leaf development and modifies vascular development in petioles. Plant & Cell Physiol. 47, 664-672.
https://doi.org/10.1093/pcp/pcj036

77. Sasabe, M., Soyano, T., Takahashi, Y., Sonobe, S., Igarashi, H., Itoh, TJ., Hidaka, M. and Machida, Y. (2006). Phosphorylation of NtMAP65-1 by a MAP kinase down-regulates its activity of microtubule bundling and stimulates progression of cytokinesis of tobacco cells. Genes & Development 20, 1004-1014.
https://doi.org/10.1101/gad.1408106

76. Gomi, K., Ogawa, D., Katou, S., Kamada, H., Nakajima, N., Saji, H., Soyano, T., Sasabe, M., Machida, Y., Mitsuhara, I., Ohashi, Y. and Seo, S. (2005). A mitogen-activated protein kinase NtMAPK4 activated by SIPKK is required for jasmonic acid signaling and involvement in ozone tolerance via stomatal movement in tobacco. Plant Cell Physiol. 46, 1885-1893.
https://doi.org/10.1093/pcp/pci211

75. Osakabe, K., Abe, K., Yamanouchi, H., Takyuu, T., Yoshioka, T., Itom Y., Kato, T., Tabata, S., Kurei, S., YoshiokaY., Machida, Y., Seki, M., Kobayashi, M., Shinozaki, K., Ichikawa, H. and Toki, S. (2005). Arabidopsis Rad51B is important for double-strand DNA breaks repair in somatic cells. Plant Mol. Biol. 57, 819-833.
https://doi.org/10.1007/s11103-005-2187-1

74. Tanaka, H., Ishikawa, M., Kitamura, S., Takahashi, Y., Soyano, T., Machida, C. and Machida, Y. (2004). The AtNACK1/HINKEL and STUD/TETRASPORE/AtNACK2 genes, which encode functionally redundant kinesins, are essential for cytokinesis in Araidopsis. Genes to Cells 9, 1199-1211.
https://doi.org/10.1111/j.1365-2443.2004.00798.x

73. Asano, T., Yoshioka, Y. and Machida, Y. (2004). A defect in atToc159 of Arabidopsis thalianacauses severe defects in leaf development. Genes & Genetic Systems 79, 207-212.
https://doi.org/10.1266/ggs.79.207

72. Araki, S., Ito, M., Soyano, T., Nishihama, R. and Machida, Y. (2004). Mitotic cyclins stimulate the activity of c-Myb-like factors for transactivation of G2/M phase-specific genes of tobacco. J. Biol. Chem. 279, 32979 – 32988.
https://doi.org/10.1074/jbc.M403171200

71. Watanabe, M., Tanaka, H., Watanabe, D., Machida, C. and Machida, Y. (2004). The ACR4 receptor-like kinase is required for surface formation of epidermis-related tissues in Arabidopsis thaliana. Plant J. 39, 298-308.
https://doi.org/10.1111/j.1365-313X.2004.02132.x

70. Asano, T., Yoshioka, Y., Kurei, S., Sakamoto, W., Sodmergen. and Machida, Y. (2004). A mutation of the CRUMPLED LEAF gene that encodes a protein localized in the outer envelope membrane of plastids affects the pattern of cell division, cell differentiation, and plastid division in Arabidopsis. Plant J. 38, 448-459.
https://doi.org/10.1111/j.1365-313X.2004.02057.x

69. Moriuchi, H., Okamoto, C., Nishihama, R., Yamashita, I., Machida, Y. and Tanaka, N. (2004). Nuclear localization and interaction of RolB with plant 14-3-3 proteins correlates with induction of adventitious roots by the oncogene rolB. Plant J. 38, 260-275.　
https://doi.org/10.1111/j.1365-313X.2004.02041.x

68. Tanaka, T., Tanaka, H., Machida, C., Watanabe, M. and Machida, Y. (2004). A new method for rapid visualization of defects in leaf cuticle reveals five intrinsic patterns of surface defects in Arabidopsis. Plant J. 37, 139-146.
https://doi.org/10.1046/j.1365-313X.2003.01946.x

67. Soyano, T., Nishihama, R., Morikiyo, K., Ishikawa, M. and Machida, Y. (2003). NQK1/NtMEK1 is a MAPKK that acts in the NPK1 MAPKKK-mediated MAPK cascade and is required for plant cytokinesis. Genes & Development 17, 1055-1067.
https://doi.org/10.1101/gad.1071103

66. Ishikawa, T., Machida, C., Yoshioka, Y. and Machida, Y. (2003). The GLOBULAR ARREST gene, which is involved in the biosynthesis of folate, is essential for late embryogenesis in Arabidopsis thaliana. Plant J. 33, 235-244.
https://doi.org/10.1046/j.1365-313x.2003.01621.x

65. Ha, C.-M., Kim, G.-T., Kim, B.-C., Jun, J.-H., Soh, M.-S., Ueno, Y., Machida, Y., Tsukaya, H. and Nam, H.-G. (2003). The BLADE-ON-PETIOLE1 gene controls leaf pattern formation through the modulation of meristematic activity in Arabidopsis. Development 133, 161-172.
https://doi.org/10.1242/dev.00196

64. Ishikawa, M., Soyano, T., Nishihama, R. and Machida, Y. (2002). The NPK1 mitogen-activated protein kinase kinase kinase contains a functional nuclear localization signal at the binding site for the NACK1 kinesin-like protein. Plant J. 32, 789-798.
https://doi.org/10.1046/j.1365-313x.2002.01469.x

63. Soyano, T., Ishikawa, M., Nishihama, R., Araki, S., Ito, M., Ito, M. and Machida, Y. (2002). Control of plant cytokinesis by an NPK1-mediated mitogen-activated protein (MAP) kinase cascade. Philos Trans R Soc Lond B Biol Sci. Jun 29; 357: 767–775.　
https://doi.org/10.1098/rstb.2002.1094

62. Iwakawa, H., Ueno, Y., Semiarti, E., Onouchi, H., Kojima, S., Tsukaya, H., Hasebe, M., Soma, T., Ikezaki, M., Machida, C. and Machida, Y. (2002). The ASYMMETRIC LEAVES2 gene of Arabidopsis thaliana, required for formation of a symmetric flat leaf lamina, encodes a member of a novel family of proteins characterized by cysteine repeats and a leucine zipper. Plant & Cell Physiol. 43, 467-478.
https://doi.org/10.1093/pcp/pcf077

61. Nishihama, R., Soyano, T., Ishikawa, M., Araki, S., Tanaka, H., Asada, T., Irie, K., Ito, M., Terada, M., Banno, H., Yamazaki, Y. and Machida, Y. (2002). Expansion of the Cell Plate in Plant Cytokinesis Requires a Kinesin-Like Protein/MAPKKK Complex. Cell 109, 87-99.
https://doi.org/10.1016/s0092-8674(02)00691-8

60. Tanaka, H., Watanabe, M., Watanabe, D., Tanaka, T., Machida, C. and Machida, Y. (2002). ACR4, a putative receptor kinase gene of Arabidopsis thaliana that is expressed in the outer cell layers of embryos and plants, is involved in proper embryogenesis. Plant & Cell Physiology 43, 419-428.
https://doi.org/10.1093/pcp/pcf052

59. Kitakura, S., Fujita, T., Ueno, Y., Terakura, S., Wabiko, H. and Machida, Y. (2002). The protein encoded by oncogene 6b from Agrobacterium tumefaciens interacts with a nuclear protein of tobacco. The Plant Cell 14, 451-463.
https://doi.org/10.1105/tpc.010360

58. Tanaka, H., Onouchi, H., Kondo, M., Hara-Nishimura, I., Nishimura, M., Machida, C. and Machida, Y. (2001). A subtilisin-like serine protease is required for epidermal surface formation in Arabidopsis embryos and juvenile plants. Development 128, 4681-4689.
https://www.ncbi.nlm.nih.gov/pubmed/11731449

27. Yoshioka, Y., Kurei, S. and Machida, Y. (2001). Identification of a monofunctional aspartate kinase gene of Arabidopsis thaliana with spatially and temporally regulated expression. Genes & Genetic Syst. 76, 189-198.
https://doi.org/10.1266/ggs.76.189

56. Ito, M., Araki, S., Matsunaga, S., Itoh, T., Nishihama, R., Machida, Y., Doonan, J.- H. and Watanabe, A. (2001). G2/M-phase-specific transcription during the plant cell cycle is mediated by c-Myb-like transcription factors. The Plant Cell 13, 1891-1905.
https://www.ncbi.nlm.nih.gov/pubmed/11487700

55. Semiarti, E., Onouchi, H., Torikai, S., Ishikawa, T., Machida, Y. and Machida, C. (2001). The transposition pattern of the Ac element in tobacco cultured cells. Genes Genet. Syst. 76, 131-139.
https://doi.org/10.1266/ggs.76.131

54. Semiarti, E., Ueno, Y., Tsukaya, H., Iwakawa, H., Machida, C. and Machida, Y. (2001). The ASYMMETRIC LEAVES2 gene of Arabidopsis thaliana regulates formation of a symmetric lamina, establishment of venation and repression of meristem-related homeobox genes in leaves. Development 128, 1771-1783.
https://www.ncbi.nlm.nih.gov/pubmed/11311158

53. Nishihama, R., Ishikawa, M., Araki, S., Soyano, T., Asada, T. and Machida, Y. (2001). The NPK1 mitogen-activated kinase kinase kinase is a regulator of cell-plate formation in plant cytokinesis. Genes & Development 15, 352-363.
https://doi.org/10.1101/gad.863701

52. Nakagawa, Y., Machida, C., Machida, Y. and Toriyama, K. (2001). A system to induce deletion of genomic sequences using R/RS site-specific recombination and the Ac transposon in transgenic rice plants. Theor. Appl. Genet. 102, 1136-1141.
https://doi.org/10.1007/s001220100580

51. Hamada, S., Onouchi, H., Tanaka, H., Kudo, M., Liu, Y.-G., Shibata, D., Machida, C. and Machida, Y. (2000). Mutations in the WUSCHEL gene of Arabidopsis thaliana result in the development of shoot without juvenile leaves. Plant J. 24, 91-101.
https://doi.org/10.1046/j.1365-313X.2000.00858.x

50. Toyoda-Yamamoto, A., Shimoda, N. and Machida, Y. (2000). Genetic analysis of the signal sensing region of histidine-protein kinase VirA of Agrobacterium tumefaciens. Mol. Gen. Genet. 263, 939-947.
https://doi.org/10.1007/PL00008694

49. Nakagawa, Y., Machida, C., Machida, Y. and Toriyama, K. (2000). Frequency and pattern of transposition of the maize transposable element Ds in transgenic plants. Plant & Cell Physiology 41, 733-742.
https://doi.org/10.1093/pcp/41.6.733

48. Kojima, S., Banno, H., Yoshioka, Y., Oka, A., Machida, C. and Machida, Y. (1999). A binary vector plasmid for gene expression in plant cells that is stably maintained in agrobacterium cells. DNA Research 6, 407-410.
https://doi.org/10.1093/dnares/6.6.407

47. Bhalerao, R.-P., Salchert, K., Bako, L., Ökresz, L., Szabados, L., Muranaka, T., Machida, Y., Schell, J. and Koncz, C. (1999). Regulatory interaction of PRL1 WD protein with Arabidopsis SNF1-like protein kinases. Proc. Natl. Acad. Sci. USA. vol. 96 no. 9, 5322-5327.　
https://doi.org/10.1073/pnas.96.9.5322

46. Machida, Y., Nakashima, M., Morikiyo, K., Banno, H., Ishikawa, M., Soyano, T. and Nishihama, R. (1998). MAPKKK-related protein kinase NPK1: Regulation of the M phase of plant cell cycle. Journal of Plant Research 111: 243-246.　
https://doi.org/10.1007/BF02512177

45. Nakashima, M., Hirano, K., Nakashima, S., Banno, H., Nishihama, R. and Machida, Y. (1998). The expression pattern of the gene for NPK1 protein kinase related to mitogen-activated protein kinase kinase kinase (MAPKKK) in a tobacco plant: Correlation with cell proliferation. Plant and Cell Physiology, Volume 39, Issue 7, 1 July 1998, Pages 690–700.
https://doi.org/10.1093/oxfordjournals.pcp.a029423

44. Ito M., Iwase M., Kodama H., Lavisse P., Komamine A., Nishihama R., Machida Y. and Watanabe A. (1998). A Novel cis-Acting Element in Promoters of Plant B-Type Cyclin Genes Activates M Phase–Specific Transcription. The Plant Cell Vol. 10, Issue 3, 331–341.
https://doi.org/10.1105/tpc.10.3.331

43. Machida, C., Onouchi, H., Koizumi, J., Hamada, S., Semiarti, E., Torikai, S. and Machida, Y. (1997). Characterization of the transposition pattern of the Ac element in Arabidopsis thaliana using endonuclease I-SceI. Proc. Natl. Acad. Sci. USA 94, 8675-8680.
https://doi.org/10.1073/pnas.94.16.8675

42. Nishihama, R. Banno, H., Kawahara, E., Irie, K. and Machida, Y. (1997). Possible involvement of differential splicing in the regulation of the activity of Arabidopsis ANP1 that is related to mitogen-activated protein kinase kinase kinases (MAPKKKs). Plant J. 12, 39-48.
https://doi.org/10.1046/j.1365-313X.1997.12010039.x

41. Yoshioka, Y., Takahashi, Y., Matsuoka, K., Nakamura, K., Koizumi, J., Kojima, M. and Machida, Y. (1996). Transient Gene Expression in Plant Cells Mediated by Agrobacterium tumefaciens: Application for the Analysis of Virulence Loci. Plant Cell Physiol. 37(6), 782-789.
https://doi.org/10.1093/oxfordjournals.pcp.a029013

40. Usami, S., Banno, H., Ito, Y., Nishihama, R. and Machida, Y. (1995). Cutting activates a 46-kilodalton protein kinase in plants. Proc. Natl. Acad. Sci. USA 92, 8660-8664.
https://doi.org/10.1073/pnas.92.19.8660

39. Onouchi, H., Nishihama, R., Kudo, M., Machida, Y. and Machida, C. (1995). Visualization of site-specific recombination catalized by a recombinase from Zygosaccharomyces rouxii in Arabidopsis thaliana. Mol. Gen. Genet. 247, 653-660.　
https://doi.org/10.1007/BF00290396

38. Shibata, W., Banno, H., Ito, Y., Hirano, K., Irie, K., Usami, S., Machida, C. and Machida, Y. (1995). A tobacco protein kinase, NPK2, has a domain homologous to a domain found in activators of mitogen-activated protein kinases (MAPKKs). Mol. Gen. Genet. 246, 401-410.　
https://doi.org/10.1007/BF00290443

37. Ohba, T., Yoshioka, Y., Machida, C. and Machida, Y. (1995). DNA rearrangement associated with the integration of T-DNA in tobacco: an example for multiple duplications of DNA around the integration target. Plant J. 7, 157-164.
https://doi.org/10.1046/j.1365-313X.1995.07010157.x

36. Niwa, Y., Muranaka, T., Baba, A. and Machida, Y. (1994). Organ-specific and auxin-inducible expression of two tobacco par-related genes in transgenic plants. DNA Research, 1, 213-221.
https://doi.org/10.1093/dnares/1.5.213

35. Ito, Y., Bannno, H., Moribe, T., Hinata, K. and Machida, Y. (1994). NPK15, a tobacco protien-serine/threonine kinase with a single hydrophobic region near the amino terminus. Mol. Gen. Genet. 245, 1-10.　
https://doi.org/10.1007/BF00279745

34. Muranaka, T., Bannno, H. and Machida, Y. (1994). Characterization of Tobacco Protein Kinase NPK5, a Homolog of Saccharomyces cerevisiae SNF1 That Constitutively Activates Expression of the Glucose-Repressible SUC2 Gene for a Secreted Invertase of S. cerevisiae. Mol. Cell Biol. 14, 2958-2965.
https://doi.org/10.1128/MCB.14.5.2958

33. Muranaka, T., Niwa, Y. and Machida, Y. (1994). A model for a bioconversion system with the promoter of the parAt gene, which confers a high level of expression of a transgene in hairy roots. Appl. Microbiol. Biotechnol. 40, 841-845.　
https://doi.org/10.1007/s002530050077

32. Shimoda, N., Toyoda-Yamamoto, A., Aoki, S. and Machida, Y. (1993). Genetic Evidence for an Interaction between the VirA Sensor Protein and the ChvE Sugar-binding protein of Agrobacterium. J. Biol. Chem. 268, 26552-26558.
https://www.ncbi.nlm.nih.gov/pubmed/8253785

31. Bannno, H., Hirano, K., Nakamura, T., Irie, K., Nomoto, S., Matsumoto, K. and Machida, Y. (1993). NPK1, a tobacco gene that encodes a protein with a domain homologous to yeast BCK1, STE11 and Byr2 protein kinases. Mol. Cell Biol. 13, 4745-4752.
https://doi.org/10.1128/MCB.13.8.4745

30. Yoshioka, Y., Matsumoto, S., Kojima, S., Ohshima, K., Okada, N. and Machida, Y. (1993). Molecular characterization of a short interspersed repetitive element (SINE) from tobacco that exhibits sequence homology to specific tRNAs. Proc. Natl. Acad. Sci. USA 90, 6562-6566.　
https://doi.org/10.1073/pnas.90.14.6562

29. Onouchi, H., Yokoi, K., Machida, C., Matsuzaki, H., Ohshima, Y., Matsuoka, K., Nakamura, K. and Machida, Y. (1991). Operation of an efficient site-specific recombination system of Zygosaccharomyces rouxii in tobacco cells. Nucleic Acids Research 19, 6373-6378.
https://doi.org/10.1093/nar/19.23.6373

28. Okamoto, S., Toyoda-Yamamoto, A., Ito, K., Takebe, I. and Machida, Y. (1991). Localization and orientation of the VirD4 protein of Agrobacterium tumefaciens in the cell membrane. Mol. Gen. Genet. 228, 24-32.　
https://doi.org/10.1007/BF00282443

27. Matsumoto, S., Ito, Y., Hosoi, T., Takahashi, Y. and Machida, Y. (1990). Integration of Agrobacterium T-DNA into a tobacco chromosome: possible involvement of DNA homology between T-DNA and plant DNA. Mol. Gen. Genet. 224, 309-316.　
https://doi.org/10.1007/BF00262423

26. Matsuoka, K., Matsumoto, S., Hattori, S., Machida, Y. and Nakamura, K. (1990). Vacuolar targeting and posttraslational processing of the precursor to the sweet potato tuberous root storage protein in heterologous plant cells. J. Biol. Chem. 265, 19750-19757.
https://www.ncbi.nlm.nih.gov/pubmed/2246259

25. Shimoda, N., Toyoda-Yamamoto A., Nagamine, J., Usami, S., Katayama, M., Sakagami, Y. and Machida, Y. (1990). Control of expression of Agrobacterium vir genes by synergistic actions of phenolic signal molecules and monosaccharides. Proc. Natl. Acad. Sci. USA 87, 6684-6688.
https://doi.org/10.1073/pnas.87.17.6684

24. Takahashi, Y., Kuroda, H., Tanaka, T., Machida, Y., Takebe, I. and Nagata, T. (1990). Isolation of an auxin-regulated gene cDNA expressed during the transition from G0 to S phase in tobacco mesophyll protoplasts. Proc. Natl. Acad. Sci. USA 86, 9279-9283.　
https://doi.org/10.1073/pnas.86.23.9279

23. Machida, C. and Machida, Y. (1989). Regulation of IS1 transposition by the insA gene product. J. Mol. Biol. 208, 567-574.　
https://doi.org/10.1016/0022-2836(89)90148-4

22. Niwa, Y., Yamamoto, A., Machida, C, Takebe, I. and Machida Y. (1988). Right-hand border regions of octopine T-DNA are recognized by RNA polymerase of Agrobacterium as well as by VirD1 and virD2 proteins. Nucleic Acids Research 16, 7647-7661.
https://doi.org/10.1093/nar/16.15.7647

21. Okamoto, S., Machida, Y. and Takebe, I. (1988). Subcellular localization of tobacco mosaic virus minus strand RNA in infected protoplast. Virology 167, 194-200.
https://doi.org/10.1016/0042-6822(88)90069-4

20. Usami, S., Okamoto, S., Takebe, I. and Machida, Y. (1988). Novel factor inducing Agrobacteriumtumefaciens vir gene expression is present in monocotyledonous plants. Proc Natl Acad Sci USA. 1988 Jun; 85(11): 3748–3752.
https://doi.org/10.1073/pnas.85.11.3748

19. Matsumoto, S.,Takebe I. and Machida, Y. (1988). Escherichia coli lacZ gene as a biochemical and histochemical marker in plant cells. Gene 66, 19-29.
https://doi.org/10.1016/0378-1119(88)90221-1

18. Machida, C. and Machida, Y. (1987). Base substitutions in transposable element IS1 cause DNA duplication of variable length at the target site for plasmid cointegration. EMBO J. 6, 1799-1803.
https://www.ncbi.nlm.nih.gov/pubmed/3038535

17. Usami, S., Morikawa, S., Takebe, I. and Machida, Y. (1987). Absence in monocotyledonous plants of the plant factors inducing T-DNA circularization and vir gene expression in Agrobacterium. Mol. Gen. Genet. 209, 221-226.
https://doi.org/10.1007/BF00329646

16. Yamamoto, A., Iwahashi, M., Yanofsky, M.- F., Nester, E.- W., Takebe, I. and Machida, Y. (1987). The promoter proximal region in the virD locus of Agrobacterium tumefaciens is necessary for the plant-inducible circularization of T-DNA. Mol. Gen. Genet. 206, 174-177.
https://doi.org/10.1007/BF00326554

15. Machida, Y., Usami, S., Yamamoto, A. and Takebe, I. (1986). Plant-inducible recombination between the 25-base-pair border sequences of T-DNA in Agrobacterium tumefaciens. Mol. Gen. Genet. 204, 374-382.
https://doi.org/10.1007/BF00331013

14. Matsumoto, S., Machida, Y. and Takebe, I. (1986). A rapid method for assaying tumorigenicity of Agrobacterium tumefaciens. Plant Modecular Biology Reporter 4, 42-47.
https://doi.org/10.1007/BF02672488

13. Hashimoto, J. and Machida, Y. (1985). The sequence in potato spindle tuber viroid required for infection of its cDNA: a putative rocessing site in viroid replication J. Gen. Appl. Microbiol. 31, 551-561.
https://doi.org/10.2323/jgam.31.551

12. Machida, Y., Sakurai, M., Kiyokawa, S., Ubasawa, A., Suzuki, Y. and Ikeda, J.-E (1984). Nucleotide sequence of the IS element found in the T-DNA region of mutant Ti plasmid pTiA66 and distribution of its homologues in octopine Ti plasmid. Proc. Natl. Acad. Sci. USA 81, 7495-7499.
https://doi.org/10.1073/pnas.81.23.7495

11. Machida, C., Machida, Y. and Ohtsubo, E. (1984). Both inverted repeat sequences of the insertion element IS1 provide promorter function for RNA polymerase. J. Mol. Biol. 177, 247-265.
https://doi.org/10.1016/0022-2836(84)90455-8

10. Machida, Y., Machida, C. and Ohtsubo, E. (1984). Insertion element IS1 encodes two structural genes responsible for its transposition. J. Mol. Biol. 177, 229-245.
https://doi.org/10.1016/0022-2836(84)90454-6

9. Armstrong, K.-A., Acosta, R., Lender, E., Machida, Y., Pancotto, M., McCormick, M., Ohtsubo, H. and Ohtsubo, E. (1984). A 37 × 103 molecular weight plasmid-encoded protein is required for replication and copy number control in the plasmid pSC101 and its temperature-sensitive derivative pHS1. J. Mol. Biol. 175, 331-348.
https://doi.org/10.1016/0022-2836(84)90352-8

8. Machida, Y. and Ikeda, J.-E. (1983). Simple method for detection of Ti plasmid DNA in Agrobacterium tumefaciens. Plant Molecular Biology Reporter 1, 39-40.
https://doi.org/10.1007/BF02680261

7. Zenilman, M., Machida, Y., Ohtsubo, H. and Ohtsubo, E. (1983). Inactivation of the replication genes of a pSC101 derivative by IS1-mediated integration of the plasmid pSM1. J. Gen. Appl. Microbiol. 29, 223-232.　　
https://doi.org/10.2323/jgam.29.223

6. Machida, C., Machida, Y., Wang, H.-C. R., Ishizaki, K. and Ohtsubo, E. (1983). Repression of cointegration ability of insetion element IS1 by transcriptional readthrough from flanking regions. Cell 34, 135-142.　　
https://doi.org/10.1016/0092-8674(83)90143-5

5. Machida, Y., Machida, C. and Ohtsubo, E. (1982). A novel type of transposon generated by insertion element IS102 present in a pSC101 derivative. Cell 30, 29-36.
https://doi.org/10.1016/0092-8674(82)90008-3

4. Machida, Y., Machida, C., Ohtsubo, H. and Ohtsubo, E. (1982). Factors determining frequency of plasmid cointegration mediated by insertion sequence IS1. Proc. Natl. Acad. Sci. USA 79, 277-281.
https://www.ncbi.nlm.nih.gov/pubmed/345709

3. Machida, Y., Okazaki, T., Miyake, T., Ohtsuka, E. and Ikehara, M. (1981). Characterization of Nascent DNA Fragments Produced by Excision of Uracil Residues in DNA. Nucleic Acids Research 9, 4755-4766.　　
https://doi.org/10.1093/nar/9.18.4755

2. Wada, A., Tachibana, H., Ueno, S., Hushimi, Y. and Machida, Y. (1977). Melting Fine Structure of DNA Fragments of Known Sequence from φX174. Nature 269, 352-353.
https://doi.org/10.1038/269352a0

1. Machida, Y., Okazaki, T. and Okazaki, R. (1977). Discontinuous Replication of Replicative Form DNA from Bacteriophage φX174. Proc. Natl. Acad. Sci. USA. 74, 2776-2779.　　
https://doi.org/10.1073/pnas.74.7.2776

B. Invited articles

42. Iwakawa, H.,Takahashi, H., Machida, Y. and Machida, C.(2020). Roles of ASYMMETRIC LEAVES2(AS2) and Nucleolar Proteins in the Adaxial-Abaxial Polarity Specification at the Perinucleolar Region in Arabidopsis. Int. J. Mol. Sci. 2020, 21, 7314; 1-19
https://doi.org/10.3390/ijms21197314

41. Machida, C., Nakagawa, A., Kojima, S., Takahashi, H. and Machida, Y. (2015). The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. WIREs. Dev. Biol. 2015 Nov-Dec;4(6):655-671. Epub 2015 Jun 24. Review.
https://doi.org/10.1002/wdev.196

40. Ito, M. and Machida, Y. (2015). Reprogramming of plant cells induced by 6b oncoproteins from the plant pathogen Agrobacterium. J. Plant Res. 128, 423-435. [Epub ahead of print on Feb 19, 2015].
https://doi.org/10.1007/s10265-014-0694-3

39. Ishibashi, N., Kitakura, S., Terakura, S., Machida, C. and Machida, Y. (2014). Protein encoded by oncogene 6b from Agrobacterium tumefaciens has reprogramming potential and histone chaperone-like activity. In Progress of creal genome engineering mediated by Agrobacterium tumefaciens: Frontiers in PLANT SCIENCE (ed. by Seiichiro Toki & Toshihiko Komari), 28 October 2014, vol. 5, Article 572, p1-7,
https://doi.org/10.3389/fpls.2014.00572

38. Sasabe, M. and Machida, Y. (2014). Signaling pathway that controls plant cytokinesis. In Signalling Pathways in Plants: ed. by Yasunori Machida, Chentao Lin & Fuyuhiko Tamanoi, THE ENZYMES, vol. 35, Burlington: Academic Press, pp. 145-165.
https://doi.org/10.1016/B978-0-12-801922-1.00006-3

37. Sasabe, M. and Machida, Y. (2012). Regulation of Organization and Function of Microtubules by the itogen-Activated Protein Kinase Cascade During Plant Cytokinasis. Cytoskeleton 69(11), 913-918. Epub 2012 Oct 1.
https://onlinelibrary.wiley.com/doi/10.1002/cm.21072/full

36. Sasabe, M. and Machida, Y. (2008). Signaling by protein phosphorylation in cell division. In Annual Plant Reviews, Vol. 33 (ed. by Zenbiyao Yang, Blackwell) p336-361.
https://doi.org/10.1002/9781444302387.ch12

35. Suzuki, T. and Machida, Y. (2008). MAP kinase cascades controlling cell division, plant growth and development. In Plant Growth Signaling, Plant Cell Monographs (ed, Laci Bogre) Springer-Verlag Berlin Heidelberg, p261-275.
https://link.springer.com/chapter/10.1007/7089_2007_153

34. Sasabe, M. and Machida, Y. (2007). MAP kinase signaling during M phase progression. In Cell division Control in Plants. Plant Cell Monographs (ed, D. P. S. Verma and Z. Hong) Springer-Verlag Berlin Heidelberg, p233-250.
https://link.springer.com/chapter/10.1007/7089_2007_130

33. Sasabe, M. and Machida, Y. (2006). MAP65: a bridge linking a MAP kinase to microtubule turnover. Curr. Opin. Plant Biol. 9, 563-570.
https://doi.org/10.1016/j.pbi.2006.09.010

32. Sasabe, M., Takahashi, Y., Soyano, T., Tanaka, H., Kousetsu, K., Suzuki, T. and Machida, Y. (2006). The NACK-PQR MAP kinase cascade controls plant cytokinesis. in Biotechnology in Agriculture and Forestry, Vol. 58, Tobacco BY-2 Cells: From Cellular Dynamics to Omics (ed, Nagata, T. Matsuoka, K. and Inze, D.) p79-94. Springer-Verlag Berlin Heidelberg.
https://link.springer.com/chapter/10.1007/3-540-32674-X_6

31. Tanaka, H. and Machida, Y. (2005). The cuticle and cellular interactions. In BIOLOGY in THE PLANT CUTICLE, ed. By Markus Riederer, Springer, pp311-332.
https://doi.org/10.1002/9780470988718.ch10

30. Takahashi, Y., Soyano, T., Sasabe, M. and Machida, Y. (2004). A MAP kinase cascade that controls plant cytokinesis. J. Biochemistry 136,127-132.
https://academic.oup.com/jb/article-abstract/136/2/127/802200?redirectedFrom=fulltext

29. Kitakura, S., Fujita, T., Azechi, Y., Ueno, Y., Terakura, S., Wabiko, H. and Machida, Y.: The protein encoded by oncogene 6b from Agrobacterium tumefaciens interacts with a nuclear-localized proteins in tobacco cells. In Endocytobiology VIII 15, 170-180 (2004)

28. Machida, C., Ueno, Y. and Machida, Y. (2003). Function of the ASYMMETRIC LEAVES1 and ASYMMETRIC LEAVES2 genes in leaf development of Arabidopsis. Plant Morphology 15, 30-39.
https://doi.org/10.5685/plmorphol.15.30

27. Machida, C., Iwakawa, H., Ueno, Y., Semiarti, E., Tsukaya, H., Hasebe, M., Kojima, S. and Machida, Y. (2003). Formation of a symmetric flat leaf lamina in Arabidopsis. in Morphogenesis and Pattern Formation in Biological Systems: Experiments and Models (ed. By Sekimura T., Noji, N., Ueno, N. and Maini, P.-K.) published by Springer-Verlag177-187.
https://link.springer.com/chapter/10.1007%2F978-4-431-65958-7_15

26. Ueno, Y., Kitakura, S., Terakura, S. and Machida, Y. (2002). 6b gene: A New tool for the elucidation of the growth and/or the differentiation of plant cells. Web essay in the textbook Plant Physiology (3rd Ed. by Lincoln Taiz, http://www.plantphys.net/ article.php?ch=e&id=282&PHPSESSID=39b7ec2eedcc7546b5473a3687cd09a0 )

25. MAPK Group (Ichimura, K., et al.) Ichimura, K., Shinozaki, K., Tena, G., Sheen, J., Henry, Y., Champion, A., Kleis, M., Zhang, S., Hirt, H., Wilson, C., Heberle-Bors, E., Ellis, B.-E., Morris, P.-C., Innes, R.-W., Ecker, J.-R., Scheel, D., Klessig, D.-F., Machida, Y., Mundy, J., Ohashi, Y. and Walker, J.-C. (2002). Mitogen-activated protein kinase cascades in plants: a new nomenclature. Trend in Plant Sci. 7: 301-308.
https://doi.org/10.1016/S1360-1385(02)02302-6

24. Nishihama, R., and Machida, Y. (2001). Expansion of the phragmoplast during plant cytokinesis: a MAPK pathway may MAP it out. Curr Opin Plant Biol. 4: 507-512.
https://doi.org/10.1016/S1369-5266(00)00208-9

23. Machida, Y., Kitakura, S., Fujita, T., Ueno, Y., Azechi, Y. and Wabiko, H. (2000). Molecular mechanism of phytohormone-independent growth of plant cells transformed with Agrobacterium tumefaciens T-DNA gene 6b. Proceedings of The 2000 Korea-Japan Joint Symposium 14: 137-141.

22. Machida, C., Onouchi, H., Semiarti, E., Ishikawa, T. and Machida, Y. (2000). Use of the R-RS site-specific recombination system in plants. in Plant Molecular Biology Manual (ed. by Gelvin, S.B.) published by Kluwer Academic Publishers (Netherland) N2, 1-23.
https://link.springer.com/chapter/10.1007/978-94-011-4217-5_6

21. Nishihama, R. and Machida, Y. (2000). The MAP kinase cascade that includes MAPKKK-related protein kinase NPK1 controls a mitotic process in plant cells. in Results and Problems in Cell Differentiation, Vol. 27, Ed by Hirt, H. MAP Kinases in Plant Signal Transduction, Springer-Verlag Berlin Heidelberg, p119-p130.
https://link.springer.com/chapter/10.1007%2F978-3-540-49166-8_9

20. Machida, Y., Onouchi, H., Tanaka, H., Hamada, S., Ishikawa, T., Semiarti, E., Iwakawa, H., Nomura, K. and Machida. C. (1999). The transposition pattern of the Ac element and its use for targeted transposition in Arabidopsis thaliana. Proceedings of The 1999 Korea-Japan Joint Symposium 13: 11-15.

19. 町田泰則 (1998). 葉の形づくりに関わる遺伝子, 植物の生長：遺伝子から何が見えるか, 第 12 回「大学と科学」公開シンポジウム組織委員会編、クバプロ、p130-p137.

18. Machida, Y., Nishihama, R. and Kitakura, S. (1997). Progress in studies of plant homologs of mitogen-activated protein (MAP) kinase and potential upstream components in kinase cascades. Critical Reviews in Plant Sciences. 16(6), 481-496.
https://doi.org/10.1080/07352689709701957

17. Nishihama, R., Banno, H., Shibata, W., Hirano, K., Nakashima, M., Usami, S. and Machida, Y. (1995). Plant homologues of components of MAPK (mitogen-activated protein kinase) signal pathways in yeast and animal cells. Plant Cell Physiol. 36, 749-757.
https://doi.org/10.1093/oxfordjournals.pcp.a078818

16. Machida, Y., Onouchi, H., Torikai, S., Kudo, M., Koizumi, J. and Machida, C. (1995). Use of site-specific recombination systems for isolation of mutants of Arabidopsis thaliana: the tagging/deletion strategy, in Modification of Gene Expression and Non-mendelian Inheritance (ed. by Oono, K. and Takaiwa, F.) published by NIAR and STA (Tsukuba, Japan), p199-222.

15. Yoshioka, Y., Takahashi, Y. Matsumoto, S., Kojima, S., Matsuoka, K., Nakamura, K., Oshima, K., Okada, N. and Machida, Y. (1994). Mechanisms of T-DNA transfer and integration into plant chromosomes : role of virB, virD4 and virE2 and a short interspersed repetitive element (SINE) from tobacco. In Molecular mechanisms of bacterial virulence (ed. by C. Kado and J. Crosa) Kluwer Academic Publishers, Netherlands, pp231-248.
https://link.springer.com/chapter/10.1007/978-94-011-0746-4_17

14. Machida, Y., Shimoda, N., Yamamoto-Toyoda, A., Takahashi, Y., Nishihama, R., Aoki, S., Matsuoka, K., Nakamura, K., Yoshioka, Y., Ohba, T. and Obata, R.- T. (1993). Molecular interactions between Agrobacterium and plant cells. In Advances in molecular genetics of plant-microbe interactions, (ed. by E. W. Nester) vol. 2, Kluwer Academic Publishers, Netherlands, 85-96.
https://link.springer.com/chapter/10.1007/978-94-017-0651-3_9

13. Banno, H., Muranaka, T., Ito, Y., Moribe, T., Usami, S., Hinata, K. and Machida, Y. (1993). Isolation and characterization of cDNA clones that encode protein kinases of Nicotiana tabacum. J. Plant Res., Special Issue 3, 181-192.

12. 町田千代子, 尾之内均, 町田泰則 (1993). アグロバクテリウム T-DNA 転移を利用した植物遺伝子の解析, 日本農芸化学会誌, 67: 711-715
https://doi.org/10.1271/nogeikagaku1924.67.711

11. Machida, Y., Okamoto, S., Matsumoto, S., Usami, S., Yamamoto, A., Niwa, Y., Jeong, S. - D., Nagamine, J., Shimoda, N., Machida, C. and Iwahashi, M. (1989). Mechanism of crown gall formation: T-DNA transfer from Agrobacterium to plant cells. Bot. Mag. Tokyo 102, 331-350.
https://doi.org/10.1007/BF02488571.pdf

10. Machida, Y., Okamoto, S., Usami, S., Yamamoto, A., Niwa, Y., Jeong, S.- D., Shimoda, N. and Nagamine, J. (1989). Mechanism of T-DNA transfer from Agrobacterium to plant cells. In Interactions between plants and microorganisms, Proceedings of the JSPS-NUS Inter-Faculty Seminar, Singapore, 77-89.
(ISBN) 9810013280

9. Machida, Y., Okamoto, S., Usami, S., Yamamoto, A., Niwa, Y., Jeong, S.-D. and Nagamine, J. (1988). Mechanism of T-DNA transfer from Agrobacterium to plant cells. In Plant Biotechnology - Present and Future, Proceeding of the Int'l Symp at Gyeongsang Nat'l University in Korea, 25-26.

8. Machida, Y., Usami, S., Yamamoto, A., Niwa, Y., Iwahashi, M., Takebe, I., Yanofsky, M.- F. and Nester, E.- W. (1986). Molecular Mechanism of Crown Gall Formation: T-DNA Transfer from Agrobacterium tumefaciens to Plant Cells. In New Aspects of Plant Cell Biology and Molecular Biology, Proceeding of the Oji International Seminar. p141-144.

7. 町田泰則, 町田千代子, 大坪久子, 大坪栄一 (1985). トランスポゾンがコードする遺伝子とその発現機構＝IS1 を中心にして＝, 生化学, 57: 296-312.

6. 町田泰則, 大坪久子. 大坪栄一 (1982). 遺伝子上の特定部位に突然変異を導入する方法について— 特に遺伝子工学手法を用いて —, 生物物理, 22: 256-266.
https://doi.org/10.2142/biophys.22.256

5. Ohtsubo, E., Zenilman, M., Ohtubo, H., McCormick, M., Machida, C. and Machida, Y. (1981). Mechanism of Insertion and Cointegration Mediated by IS1 and Tn3. Cold Spring Harb. Symp. Quant. Biol. 45, 283-295.
https://doi.org/10.1101/SQB.1981.045.01.041

4. Okazaki, T., Kurosawa, Y., Ogawa, T., Seki, Y., Shinozaki, K., Hirose, S., Fujiyama, A., Machida, Y., Tamanoi, F. and Hozumi, T. (1979). Structure and Metabolism of RNA Primer in Discontinuous Replication of Prokaryotic DNA. Cold Spring Har. Sym. Quant. Biol. 43, 203-219.
https://doi.org/10.1101/SQB.1979.043.01.026

3. Tamanoi, F., Machida, Y. and Okazaki, T. (1978). Uracil Incorporation into Nascent DNA of Bacillus subtilis and Escherichia coli. Cold Spring Harb. Sym. Quant. Biol. 43, 239-242.
https://doi.org/10.1101/SQB.1979.043.01.029

2. Okazaki, R., Okazaki, T., Hirose, S., Sugino, A., Ogawa, T., Kurosawa, Y., Shinozaki, K., Tamanoi, F., Seki, T., Machida, Y., Fujiyama, A. and Kohara, Y. (1975). Discontinuous Replication in Prokaryotic Systems, In DNA Synthesis and Its Regulation (M. Goulian & P. Hanawalt, eds.) Vol. III (F. Fox, series ed.) ICN-UCLA Symposium on Molecular and Cellular Biology, p. 832, W. A. Benjamin, California.

1. Machida, Y., Kohara, Y., Hirose, S., Okazaki, R. and Okazaki, T. (1975). Discontinuous Replication of Both Strands of φX174 RF DNA. Proceeding of the Molecular Biology Meeting of Japan.

C. その他の総説的文献

28. 町田千代子, 高橋広夫, 町田泰則 (2010). 植物の葉の形作りに関わる遺伝子ネットワーク, 化学と生物, vol. 48, 456-461.

27. 町田千代子, 上野宜久, 小島晶子, 町田泰則 (2005). 葉の形作りにおける左右相称性と扁平性, 学術月報, vol58, 880-885.

26. 小島晶子, 町田泰則, 町田千代子 (2005). 植物形態形成における体軸決定の仕組み, 蛋白質・核酸・酵素, ５月号増刊, vol. 50, 724-730.

25. 征矢野敬, 町田泰則 (2003). 植物細胞の細胞質分裂制御　キネシン様蛋白質とMAPキナーゼカスケードの役割, 蛋白質・核酸・酵素 Vol.48, No.12, 683-1692.
PMID:12971271

24. 石川雅樹, 征矢野敬, 荒木智史, 西浜竜一, 町田泰則 (2001). 植物細胞の細胞質分裂はどのように制御されているのか, 化学と生物, vol. 39, 232-23.
https://doi.org/10.1271/kagakutoseibutsu1962.39.232

23. 西浜竜一, 石川雅樹, 町田泰則 (2000). 細胞質分裂と MAP キナーゼカスケード,「植物細胞の分裂」細胞工学シリーズ別冊（No. 13）p58-66.

22. 町田千代子, 田中博和, 岩川秀和, 町田泰則 (2000). トランスポソンによる植物遺伝子タギング法の確立, BRAIN (ブレインテクノニュース), 生研機構, vol.78, 18-23.

21. 町田泰則 (2000). 環境に対する植物の分化応答, 学術月報, 日本学術振興会, vol. 53, 9-16.

20. 宇佐美昭二, 町田泰則（1997). 傷により一過的に活性化されるタバコ PMSAP キナーゼ, 蛋白質・核酸・酵素, vol. 42, 717-726.

19. 西浜竜一, 中島麻里奈, 町田泰則 (1996). タバコ NPK1 (MAPKKK) とその活性化因子 NAK キネシン様タンパク質の細胞分裂への関与, 「細胞周期制御の分子機構」蛋白質・核酸・酵素９月増刊号、vol 41, 1869-1875.

18. 町田千代子, 小泉　順, 尾之内均, 町田泰則 (1996). シロイヌナズナ染色体のメガスケールの解析法,「モデル植物の実験プロトコール：イネ・シロイヌナズナ編」植物細胞工学別冊（植物細胞工学シリーズ 4, 島本　功, 岡田清孝　編）157-164.

17. 坂野弘美, 尾之内均, 中島麻里奈, 町田泰則（1995). 細胞増殖の制御と情報伝達, 「植物の分子細胞生物学」植物細胞工学別冊（植物細胞工学シリーズ 3, 中村研三, 福田裕穂, 町田泰則　編）173-182.

16. 平野敬子, 坂野弘美, 西浜竜一, 町田泰則（1994). 植物のマップキナーゼカスケード, 細胞工学, 13: 473-480.

15. 坂野弘美, 伊藤幸博, 平野敬子, 日向康吉, 柴田　渉, 町田泰則 (1994). 植物増殖に関連すると思われるプロテインキナーゼ, 植物細胞工学, 6: 43-50.

14. 町田泰則, 下田修義, 西浜竜一, 高橋慶人 (1992). アグロバクテリウムと植物のコミュニケーション, 組織培養, 18: 341-346.

13. 町田泰則, 吉岡　泰 (1992). T-DNA の植物染色体への組込みと遺伝子ターゲティングの試み, 蛋白質核酸酵素, 37: 1041-1046.

12. 村中俊哉, 赤間一仁, 岡田清孝, 町田泰則 (1992). 遺伝子導入実験法(3) —アグロバクテリウムを用いた形質転換 —, 植物細胞工学, 4: 193-203.　

11. 吉岡　泰, 町田泰則 (1991). T-DNA の植物染色体組込みに関する最近の知見, 植物細胞工学, 3: 458-463.

10. 町田泰則 (1991). ゲノム再編成による遺伝子発現調節（下）, T-DNA の植物染色体への組み込み機構, Cell Science, 7: 10-19.

9. 松本省吾, 町田泰則 (1990). 植物形質転換法, 現代化学, 6月号 25-29.

8. 松本省吾, 町田泰則 (1990). Ti プラスミドベクターによる植物への遺伝子導入, 蛋白質核酸酵素, 35: 2476-2489.

7. 町田泰則 (1989). 遺伝子導入の原理と方法 —Ti プラスミドベクター系 —, 植物細胞工学, 1: 23-33.

6. 松本省吾, 町田千代子, 町田泰則 (1989). トランスジェニック植物の作製法, 細胞工学, 8: 721-727.

5. 岡本繁久, 町田泰則 (1989). クラウンゴール腫瘍, — T-DNA 転移の分子機構 —, 蛋白質核酸酵素, 34: 1804-1814.

4. 町田千代子, 町田泰則, 飯田　滋 (1988). トランスポゾンの標的部位が重複するのはなぜか　解明進むトランスポゼース, 逆転写酵素の働き, 化学と生物, 26: 140-142.

3. 丹羽康夫, 宇佐美昭二, 山本章子, 町田泰則 (1987). アグロバクテリムと植物細胞の相互作用, 微生物, 3: 72-82.

2. 松本省吾, 町田泰則 (1987). Ti プラスミドベクターによる遺伝子導入と外来遺伝子発現の研究, 蛋白質核酸酵素, 別冊 No.30: 191-200.

1. 町田千代子, 町田泰則, 下遠野邦忠 (1983). トランスポゾン, 化学の領域, 37: 707-715.

D. 著書

13. 笹部美知子, 町田泰則(2010). 植物におけるMAPキナーゼカスケード「植物のシグナル伝達 — 分子と応答 —」, 柿本辰男・高山誠司・福田裕穂・松岡信　編集, 共立出版, 52-60.　
ISBN: 978-4-320-05703-6

12. 町田千代子, 上野宜久, 町田泰則(2001). 植物ゲノム機能のダイナミズム ― 転写因子による発現制御, p46-56. 岩渕雅樹, 篠崎一雄編, シュプリンガー・フェアラーク東京.
ISBN: 978-4431709435

11. 町田泰則 (1996).「生物学辞典」第４版　部分執筆, 岩波書店.
ISBN: 9784000800877

10. 町田泰則 (1997). 「分子細胞生物学辞典」第一版　部分執筆, 村松正実　他編, 東京化学同人.
ISBN: 978-4807904617

9. 伊藤幸博, 町田泰則 (1995). 植物プロテインキナーゼの作用, 「植物の遺伝子発現」, 長田敏行・内宮博文　編, 講談社サイエンティフィク, 95-108.
ISBN: 978-4-06-153538-1

8. 町田泰則 (1992). 新生化学実験講座　日本生化学会編, 東京化学同人, 第2巻　核酸 III　組換え DNA 技術　第3章　クローニングベクター, pp103-116 .
ISBN: 9784807910731

7. 町田泰則 (1991). Agrobacterium の機能を利用した植物染色体への DNA 組込み機構, 植物全能性の分子生物学, 駒嶺　穆　他偏, 朝倉書店, 155-176.
ISBN-13: 978-4254170771

6. 町田泰則 (1990). アグロバクテリウムによる植物染色体への遺伝子導入機構, 高等植物の情報発現と制御, シリーズ分子生物学の進歩13巻, 日本分子生物学会編（岡田吉美, 池田穣衛　編集）36-56.
ISBN-13: 978-4621034446

5. 町田泰則 (1989). Tiプラスミド, 最新植物工学要覧, 山口彦之（ほか編集）R&Dプランニング.

4. 町田泰則, 河津　哲 (1988). 植物への外来遺伝子導入法, 細胞生物学研究法, 大沢省三, 堀田康雄編, 廣川書店, 204 – 215.

3. 町田泰則 (1986). バクテリアのトランスポゾン, バイオサイエンスのための新しい分子生物学, 斉藤日向他編, 南江堂, 101-110.
ISBN: 9784524218110

2. 町田泰則 (1984). Ti プラスミドの精製法, 植物遺伝子工学マニュアル, 内宮博文他編, 講談社, 105-110.
ISBN: 978-4-06-139587-9

1. 大坪栄一, Doroszkiewicz, W., Davison, D., Nyman, K., 大坪久子, 町田千代子, 町田泰則 (1983). 挿入因子 IS1 の構造と機能の発現, 組換え DNA 実験 II, 高木康敬編, 共立出版, 103-119.
ISBN: 978-4-320-06059-3

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