Division of Materials Science

Group of Biochemistry

Faculty and Research Theme

Toshiya Endo Professor

Toshiya Endo (Professor)

Life of proteins and organelle biogenesis

Tohru Yoshihisa (Associate Professor)

Intracellular dynamics of tRNA during its biogenesis

Shuh-ichi Nishikawa (Associate Professor)

Control of organelle formation and organelle biogenesis by molecular chaperones

Life of proteins and cellular functions

Proteins are major key players in living systems; their amino-acid sequences are controlled by the genetic information in DNA.  Newly synthesized proteins need to fold into their native conformations in order to become functional.  However, recent evidence shows that this process is not spontaneous, but instead requires helper proteins called molecular chaperones.

Translocators controlling mitochondrial protein import.

Eukaryotic cells contain several membrane-bound compartments or organelles. By virtue of this compartmentalization, they can perform complex reactions in parallel in distinct compartments, and store energy by distributing substances asymmetrically to the organellar membranes.  To perform their functions, organelles need to place resident proteins in correct intraorganellar locations.   To this end, cells employ protein translocators in the organellar membranes as well as soluble molecular chaperones. Together, these factors control the protein traffic and deliver newly synthesized proteins to the appropriate destination compartments.  The protein translocators are protein nano-machines that perform multiple tasks: they function as receptors for targeting signals; provide a protein-conducting channel through which newly synthesized proteins cross the organellar membrane in an unfolded state; and generate a driving force to achieve vectorial movement of the translocating polypeptide chain.  Much recent interest has been focused on how the translocators perform these complex functions correctly and efficiently.
Even after folding into their native structures in the appropriate destination compartments, some proteins may become nonfunctional due to stresses placed on cells, such as high temperature, exposure to heavy metals, and oxidative stresses.  In these cases, various types of molecular chaperones are utilized to repair the aberrant proteins.  If efforts to renature proteins fail, the aberrant proteins are subjected to disposal by degradation systems.  Central questions remaining to be answered include how the cell discriminates between normal and aberrant proteins, and how the final judgment on protein fate is made.   It also remains unknown whether protein quality control has profound biological significance in multicellular organisms, in processes such as fertilization and development of higher plants.

We are asking questions about various aspects of the life of proteins described above. To answer these questions, we are using a variety of techniques including biochemistry, molecular biology, cell biology, structural biology, and genetics.  We are also extending our analyses of intracellular traffic and quality control to the life of RNAs in eukaryotic cells.  We are thereby assembling a new picture of proteins (and RNAs) in the context of a dynamic cellular environment.
Lab members
References
  1. Yamano, K. et al. (2010) EMBO Rep. 11, 187-193.
  2. Maruyama, D. et al. (2010) Proc. Natl. Acad. Sci. USA 107, 1684-1689.
  3. Kawano, S. et al. (2009) Proc. Natl. Acad. Sci. USA 106, 14403-14407.
  4. Tamura, Y. et al. (2009) J. Cell Biol. 184, 129-141.
  5. Takano, A. et al. (2005) Science 309, 140-142.
  6. Ishikawa, D. et al. (2004) J. Cell Biol. 166: 621-627.
  7. Esaki, M. et al. (2003) Nature Struct. Biol. 10: 988-994.
  8. Yamamoto, H. et al. (2002) Cell 111: 519-528.
  9. Abe, Y. et al. (2000) Cell 100: 551-560.
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Laboratory HP

References

Japanese

Group of Biological Rhythm

Group of Developmental Cell Biology

Group of Plant Reproductive Systems

Group of Intracellular Dynamics

Group of Plant Developmental Biology

Group of Animal Development

Group of Brain Function and Structure

Group of Molecular Neurobiology

Group of Cell Regulation

Group of Molecular and Cell Biology

Group of Supra-molecular Structure

Group of Biomembrane Functions

Group of Developmental Morphogenesis

Group of Signal Transduction

Group of Plant Physiology

Group of Cell Biology

Group of Marine Developmental Biochemistry

Laboratory of Gene Analysis

Group of Functional Genomics and Clock Bio-nanomachine

Group of Animal Organ Functions

Group of Biochemistry

Unit on Nervous Development Systems

Unit of Cellular Morphogenesis

Group of Protein NMR Research